Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0792951.5d.4d with 115 members (SH3 domain containing GRB2 like)

Opisthokonta / Metazoa / Eumetazoa / Bilateria / Protostomia / Ecdysozoa /

Completeness score: 0.96

‹

Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

91.3%

This HOG has 1585 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0792945	Opisthokonta	817		94.5%	2
HOG:E0793412	Opisthokonta	738		89.4%	2
HOG:E0793408	Opisthokonta	732		68.6%	2
HOG:E0779932	Eumetazoa	724		41.6%	2
HOG:E0793054	Opisthokonta	714		91.6%	2
HOG:E0793093	Opisthokonta	666		69.5%	2
HOG:E0793342	Opisthokonta	655		62.4%	2
HOG:E0804286	Eukaryota	621		80.5%	2
HOG:E0793011	Opisthokonta	440		52.3%	2
HOG:E0789799	Metazoa	242		74.8%	2
HOG:E0803738	Eukaryota	240		96.3%	2
HOG:E0792530	Metazoa	216		35.2%	2
HOG:E0759645	Deuterostomia	215		94.4%	2
HOG:E0314570	Embryophyta	199		92.0%	2
HOG:E0751380	Gnathostomata	175		90.3%	2
HOG:E0791600	Metazoa	170		89.4%	2
HOG:E0832018	Eukaryota	164		92.1%	2
HOG:E0781929	Eumetazoa	156		88.5%	2
HOG:E0739600	Euteleostomi	138		92.8%	2
HOG:E0779864	Eumetazoa	116		81.9%	2
HOG:E0761101	Bilateria	109		48.6%	2
HOG:E0319259	Streptophyta	102		84.3%	2
HOG:E0477641	Ascomycota	93		100.0%	2
HOG:E0293218	Magnoliopsida	85		97.6%	2
HOG:E0740086	Euteleostomi	76		90.8%	2

Showing 1 to 25 of 1584 rows rows per page